PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G271800.1.p
Common NameLOC101759368, SETIT_004887mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family LBD
Protein Properties Length: 92aa    MW: 9962.81 Da    PI: 9.1868
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G271800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26074.91.5e-23490179
              DUF260  1 aCaaCkvlrrkCakd..Cvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgv 79
                        +C++C+vlr++C++   C+++p++     p++q++++ +++k++G++ +l+ll+a+p ++ r+ +++sl+yeA+ r+ +PvyG+v++
  Seita.5G271800.1.p  4 SCNGCRVLRKGCSDTctCTIRPCLqwiktPEAQANATVFLAKFYGRAGLLNLLAAAPADHlRPVVFRSLLYEACGRIVNPVYGSVSL 90
                        6************9855789************************************88877***********************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089113.555391IPR004883Lateral organ boundaries, LOB
PfamPF031956.3E-19490IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDTCT CTIRPCLQWI KTPEAQANAT VFLAKFYGRA GLLNLLAAAP  60
ADHLRPVVFR SLLYEACGRI VNPVYGSVSL L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9547641e-107EU954764.1 Zea mays clone 1482325 hypothetical protein mRNA, complete cds.
GenBankKJ7284041e-107KJ728404.1 Zea mays clone pUT6709 LOB transcription factor (LOB15) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972094.13e-62PREDICTED: LOB domain-containing protein 40-like
SwissprotQ9M8863e-49LBD41_ARATH; LOB domain-containing protein 41
TrEMBLK3XSI83e-62K3XSI8_SETIT; Uncharacterized protein
STRINGSi004887m1e-61(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.13e-40LOB domain-containing protein 41